rs2487588 chr1:42335343 T>C
- Sequence
aagtccctgcgcggtcacggtcgc[T/C]tcgacgcacgcaggatccctccgc
- ASB in cell types
- fetal proerythroblasts CD34+ hematopoietic stem cells-derived proerythroblasts K562 (myelogenous leukemia) keratinocytes
- ASB for transcription factors
- NFE2_HUMAN SNAI2_HUMAN BC11B_HUMAN TBP_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NFE2_HUMAN | 3.17 | -0.50 | 1.33 | n/a | No Hit | |||
| SNAI2_HUMAN | 2.91 | -4.86 | 1.50 | n/a | No Hit | |||
| BC11B_HUMAN | -0.34 | 2.29 | 2.00 | n/a | n/a | |||
| TBP_HUMAN | 0.04 | 1.29 | 1.00 | n/a | No Hit | |||
| GCR_HUMAN | 0.10 | 1.21 | 1.18 | n/a | No Hit |
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Motif analysis
