rs248793 chr5:6633666 C>G

Sequence
cgtgggctgcgcggtcttcgcgcg[C/G]aatcgtcagacgaactcagtgtac
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
KMT2A_HUMAN NCOR1_HUMAN BRD4_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
KMT2A_HUMAN 1.57 -0.31 0.021.00 1.00 n/a n/a
NCOR1_HUMAN 2.42 -0.22 0.031.00 1.00 n/a n/a
BRD4_HUMAN 1.39 0.06 0.031.00 1.44 n/a n/a
Items per page:
1 – 3 of 3

Motif analysis

No data available

Genetic associations

GTEx eQTL Artery_Tibial,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hippocampus,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Whole_Blood

Download