rs2488995 chr1:1038845 A>G

Sequence
aggcagggccaaagggagagggag[A/G]tgctgaggggagagagaaggggaa
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
FOXK2_HUMAN IKZF2_HUMAN ARNT_HUMAN BHE40_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXK2_HUMAN n/a 3.47 1.008.9·10-4 2.00 n/a n/a
IKZF2_HUMAN -0.81 1.51 1.006.1·10-3 1.00 n/a n/a
ARNT_HUMAN n/a 2.76 1.008.6·10-3 1.00 n/a No Hit
BHE40_HUMAN -4.07 2.30 1.000.01 1.50 n/a No Hit
PRD10_HUMAN -1.10 1.92 1.000.02 1.75 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Whole_Blood

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