rs249821 chr12:98504033 T>C

Sequence
ttcctttgatcctggagacccgac[T/C]aaacgggaagccccgttctcccgc
ASB in cell types
CD14+ monocytes naive IgD+ B cells MDM(monocyte derived macrophages)
ASB for transcription factors
TADBP_HUMAN STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TADBP_HUMAN -2.83 3.08 1.002.1·10-3 1.00 n/a n/a
STAT1_HUMAN 1.89 1.31 0.050.47 2.33 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP cystatin c in serum,  hip bone mineral density (bmd),  refractive error,  rheumatoid arthritis
GTEx eQTL Adipose_Subcutaneous,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary

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