rs2500523 chr6:148989755 G>T
- Sequence
tttcccattctaattaaagaggct[G/T]aagggcttgtctcacctaacactg
- ASB in cell types
- D283 Med (medulloblastoma) MDM(monocyte derived macrophages)
- ASB for transcription factors
- OTX2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| OTX2_HUMAN | n/a | 3.53 | 1.50 | 5.36 | Concordant |
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Motif analysis
Genetic associations
GRASP 2 hour glucose, infant head circumference, microalbuminuria, urinary albumin-to-creatinine ratio