rs2501299 chr1:22019154 C>T
- Sequence
ggagtcaagctgaacagagacttc[C/T]gcatcatgagggtggtgggaggtg
- ASB in cell types
- K562 (myelogenous leukemia) MOLT-4 (Adult T acute lymphoblastic leukemia) MOLM14 (Adult acute myeloid leukemia) spleen
- ASB for transcription factors
- CDK9_HUMAN BRD4_HUMAN FOXK2_HUMAN SPT5H_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CDK9_HUMAN | 3.19 | -2.28 | 1.00 | n/a | n/a | |||
| BRD4_HUMAN | 2.28 | -0.05 | 1.00 | n/a | n/a | |||
| FOXK2_HUMAN | 2.54 | -2.29 | 1.12 | n/a | n/a | |||
| SPT5H_HUMAN | 3.50 | -3.84 | 1.00 | n/a | n/a | |||
| E4F1_HUMAN | 2.58 | n/a | 2.50 | n/a | n/a |
Items per page:
1 – 5 of 29
Motif analysis
Genetic associations
GRASP barnes akathisia rating scale, bipolar disorder, cystatin c in serum, endometriosis, major depressive disorder, major depressive disorder and bipolar disorder combined analysis, maternal transmission distortion, transmission distortion, triglycerides