rs2503701 chr1:2189679 C>T
- Sequence
gcgggggagagcgtgtccgggcgc[C/T]gcactctgcgcagggctcttggat
- ASB in cell types
- BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- VEZF1_HUMAN GMEB1_HUMAN GCR_HUMAN NRF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| VEZF1_HUMAN | -2.91 | 1.90 | 1.50 | n/a | No Hit | |||
| GMEB1_HUMAN | 1.42 | -1.42 | 1.00 | n/a | n/a | |||
| GCR_HUMAN | 1.28 | 0.23 | 1.00 | n/a | No Hit | |||
| NRF1_HUMAN | 0.18 | 1.82 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP aortic valve calcium, height, ldl cholesterol, parkinsons disease, prop taste detection threshold, serum creatinine, total cholesterol
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Uterus, Whole_Blood