rs250962 chr2:234082692 T>C
- Sequence
ctttcctgttttctatccctggaa[T/C]gtctcagtgtcgtctgacttgttg
- ASB in cell types
- LNCaP (prostate carcinoma) LNCaP95 LNCaP C4-2 (prostate carcinoma) primary prostate cancer
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 0.13 | 1.46 | 2.08 | n/a | No Hit | |||
| FOXA1_HUMAN | 0.02 | 1.28 | 2.08 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP aortic valve calcium, fasting blood glucose, ldl cholesterol, rheumatoid arthritis, total cholesterol