rs250962 chr2:234082692 T>C

Sequence
ctttcctgttttctatccctggaa[T/C]gtctcagtgtcgtctgacttgttg
ASB in cell types
LNCaP (prostate carcinoma) LNCaP95 LNCaP C4-2 (prostate carcinoma) primary prostate cancer
ASB for transcription factors
ANDR_HUMAN FOXA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 0.13 1.46 1.003.0·10-20 2.08 n/a No Hit
FOXA1_HUMAN 0.02 1.28 1.004.4·10-4 2.08 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP aortic valve calcium,  fasting blood glucose,  ldl cholesterol,  rheumatoid arthritis,  total cholesterol

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