rs251855 chr19:39430839 G>C
- Sequence
cctatgagtcattagccactcaac[G/C]aagtcctcacttaacgtcatcaat
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) HEK293 (embryonic kidney) K562 (myelogenous leukemia) A549 (lung carcinoma)
- ASB for transcription factors
- IKZF1_HUMAN IKZF2_HUMAN ATF7_HUMAN JUN_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | 0.76 | 3.20 | 2.00 | n/a | No Hit | |||
| IKZF2_HUMAN | -1.96 | 2.40 | 1.00 | n/a | n/a | |||
| ATF7_HUMAN | 0.16 | 3.11 | 1.33 | n/a | n/a | |||
| JUN_HUMAN | 0.49 | 1.41 | 1.94 | n/a | No Hit | |||
| COT1_HUMAN | -3.70 | 2.31 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood