rs252133 chr5:141969143 C>T
- Sequence
cggcgcgccggttgagcagggcgt[C/T]tctaggcctggtcggctggcggcg
- ASB in cell types
- monocytes from periferal blood monocyte-derived dendritic cells upper lobe of left lung 22RV1 (prostate carcinoma)
- ASB for transcription factors
- SRBP2_HUMAN SPI1_HUMAN EP300_HUMAN ANDR_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SRBP2_HUMAN | n/a | 2.88 | 3.00 | n/a | No Hit | |||
| SPI1_HUMAN | n/a | 2.43 | 3.00 | n/a | No Hit | |||
| EP300_HUMAN | -0.58 | 2.30 | 1.50 | n/a | n/a | |||
| ANDR_HUMAN | 0.05 | 2.68 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood