rs2522133 chr12:120317656 A>G
- Sequence
ccgggaaggggcagaagtagaccg[A/G]cggctgggccgccattcaccaata
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) MCF7 TamR (invasive ductal breast carcinoma Tamoxifen resistant) K562 (myelogenous leukemia)
- ASB for transcription factors
- FOXA1_HUMAN ZBT40_HUMAN JUN_HUMAN GABP1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.48 | 0.17 | 1.73 | n/a | No Hit | |||
| ZBT40_HUMAN | 2.36 | -0.62 | 1.33 | n/a | n/a | |||
| JUN_HUMAN | 1.20 | 0.06 | 1.00 | n/a | No Hit | |||
| GABP1_HUMAN | -2.06 | 2.44 | 1.25 | n/a | n/a | |||
| SIN3A_HUMAN | 2.79 | -0.76 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Sun_Exposed_Lower_leg, Thyroid