rs252779 chr5:78057325 C>A
- Sequence
gtccactaggagacagcagtggac[C/A]cttagggttcctttccacacttag
- ASB in cell types
- bipolar neuron GM19239 (male B-cells lymphoblastoid cell line) GM12891 (male B- cells lymphoblastoid cell line) GM19238 (female B-cells lymphoblastoid cell lines)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.33 | 0.34 | 1.38 | 2.27 | Discordant |
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Motif analysis
