rs2533003 chr17:58083481 T>C
- Sequence
gagcgggcgggcgggcgggcggcg[T/C]gaggcggagcgcgggcggccggcg
- ASB in cell types
- MOLT-4 (Adult T acute lymphoblastic leukemia) A549 (lung carcinoma)
- ASB for transcription factors
- SPT5H_HUMAN VEZF1_HUMAN CRTC2_HUMAN JUN_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPT5H_HUMAN | 1.77 | -2.63 | 1.50 | n/a | n/a | |||
| VEZF1_HUMAN | 2.26 | -4.74 | 2.00 | 0.88 | Weak Discordant | |||
| CRTC2_HUMAN | 2.23 | n/a | 2.50 | n/a | n/a | |||
| JUN_HUMAN | 2.35 | n/a | 3.00 | n/a | No Hit |
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Motif analysis
