rs253483 chr5:16897488 T>C
- Sequence
cccacgtaaaaatctgtgttgaag[T/C]gcataccttggcttttcaaagggc
- ASB in cell types
- HEK293 (embryonic kidney) A549 (lung carcinoma) TTC-1240 (Rhabdoid tumor of the kidney)
- ASB for transcription factors
- GCR_HUMAN SMRC1_HUMAN EP300_HUMAN SMCA4_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | -0.19 | 2.59 | 1.83 | n/a | No Hit | |||
| SMRC1_HUMAN | -0.97 | 2.31 | 1.00 | n/a | n/a | |||
| EP300_HUMAN | -0.22 | 1.66 | 2.08 | n/a | n/a | |||
| SMCA4_HUMAN | -0.50 | 1.81 | 1.00 | n/a | n/a | |||
| JUN_HUMAN | -0.27 | 1.71 | 2.00 | n/a | No Hit |
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