rs254415 chr5:77775879 G>T
- Sequence
cggcgcgcgcacacaggaggcacg[G/T]gatcagggcccggcccgccctcgc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) MOLT-4 (Adult T acute lymphoblastic leukemia) SH-EP-NMYCER Tet21N (neuroblastoma)
- ASB for transcription factors
- SPT5H_HUMAN MYCN_HUMAN BHE40_HUMAN BACH1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPT5H_HUMAN | -1.25 | 2.27 | 1.00 | n/a | n/a | |||
| MYCN_HUMAN | -0.34 | 2.11 | 1.00 | 6.82 | Concordant | |||
| BHE40_HUMAN | n/a | 0.80 | 1.33 | 5.25 | Concordant | |||
| BACH1_HUMAN | -2.33 | 2.58 | 1.00 | n/a | No Hit | |||
| MED26_HUMAN | -0.82 | 1.96 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Colon_Transverse, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Pituitary