rs2555173 chr11:6612377 G>T
- Sequence
aataggctgcagggcggagaccga[G/T]ccttggcgaactgcgctgccgtag
- ASB in cell types
- K562 (myelogenous leukemia) breast tumor CD14+ monocytes GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- STAT1_HUMAN TF65_HUMAN REQU_HUMAN ESR1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 1.84 | -1.75 | 2.00 | n/a | No Hit | |||
| TF65_HUMAN | 1.99 | n/a | 3.00 | n/a | No Hit | |||
| REQU_HUMAN | -1.74 | 2.08 | 2.00 | n/a | n/a | |||
| ESR1_HUMAN | 2.09 | 0.17 | 1.86 | n/a | No Hit |
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