rs2560787 chr6:13509333 A>G
- Sequence
cactcactggagcttaagtaaata[A/G]gcaaacatttttaatataaccaca
- ASB in cell types
- MCF7 TamR (invasive ductal breast carcinoma Tamoxifen resistant) MCF7 WS8 cells
- ASB for transcription factors
- FOXA1_HUMAN FOXA2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.02 | 0.01 | 1.68 | -1.81 | Weak Concordant | |||
| FOXA2_HUMAN | 2.46 | -4.69 | 2.00 | -1.77 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Atrial_Appendage, Lung, Skin_Sun_Exposed_Lower_leg, Thyroid