rs2562350 chr5:16897690 G>T
- Sequence
agtgcaacatccacttatctccac[G/T]gcctccatttacaggctaccctga
- ASB in cell types
- A549 (lung carcinoma) HEK293 (embryonic kidney) TTC-1240 (Rhabdoid tumor of the kidney)
- ASB for transcription factors
- EP300_HUMAN GCR_HUMAN SMRC1_HUMAN JUN_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EP300_HUMAN | 0.30 | 2.13 | 2.08 | n/a | n/a | |||
| GCR_HUMAN | 0.26 | 2.29 | 1.94 | n/a | No Hit | |||
| SMRC1_HUMAN | 0.24 | 2.20 | 1.00 | n/a | n/a | |||
| JUN_HUMAN | -0.14 | 1.73 | 2.00 | n/a | No Hit | |||
| SMCA4_HUMAN | -0.35 | 1.53 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP hdl cholesterol, ldl cholesterol, microalbuminuria, sporadic creutzfeldt-jakob disease, total cholesterol