rs256958 chr5:115542368 A>G

Sequence
tttctctcttgctatatttaatgc[A/G]tgttcttataaaaggattatctat
ASB in cell types
LNCaP (prostate carcinoma) LNCaP95
ASB for transcription factors
FOXA1_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 1.60 0.32 4.1·10-131.00 1.50 n/a No Hit
ANDR_HUMAN 1.57 -0.01 6.7·10-51.00 1.46 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP college completion,  triglycerides,  years of education
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Lung,  Nerve_Tibial,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Stomach,  Testis,  Thyroid

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