rs25781 chr5:157220043 A>G

Sequence
gttctcttgtctgagccacttgaa[A/G]tcatttctctcctcaccttcttgt
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) Th1-cells
ASB for transcription factors
IKZF2_HUMAN MYB_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IKZF2_HUMAN 1.39 0.06 9.7·10-31.00 1.00 n/a n/a
MYB_HUMAN 3.11 n/a 0.011.00 3.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol ldl cholesterol obesity with early age of onset (age >2) paternal transmission distortion transmission distortion
GTEx eQTL Esophagus_Muscularis

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