ADASTRA v5.1.3
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rs2579968
chr2:42183965
G
>
C
Sequence
ccaccaggatgaggtcacctcttt[G/C]accttctggccctctttctttccg
ASB for transcription factors
ATF3_HUMAN
COT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
G
) ASB
-log10 FDR of Alt (
C
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ATF3_HUMAN
2.79
-5.12
0.02
1.00
2.00
n/a
No Hit
COT1_HUMAN
1.47
-2.56
0.04
1.00
1.50
-3.76
Concordant
Items per page:
5
1 – 2 of 2
Motif analysis
COT1_HUMAN
Concordant
Show reverse complement
Show rev. comp.
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Genetic associations
GRASP
2 hour glucose
,
body mass index (bmi)
,
diastolic blood pressure (dbp)
,
fasting blood glucose
,
systolic blood pressure (sbp)
,
waist hip ratio
GTEx eQTL
Adipose_Subcutaneous
,
Adipose_Visceral_Omentum
,
Artery_Aorta
,
Artery_Tibial
,
Brain_Cortex
,
Brain_Frontal_Cortex_BA9
,
Breast_Mammary_Tissue
,
Cells_Cultured_fibroblasts
,
Cells_EBV-transformed_lymphocytes
,
Colon_Sigmoid
,
Colon_Transverse
,
Esophagus_Mucosa
,
Heart_Atrial_Appendage
,
Heart_Left_Ventricle
,
Liver
,
Lung
,
Muscle_Skeletal
,
Nerve_Tibial
,
Pancreas
,
Prostate
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Small_Intestine_Terminal_Ileum
,
Spleen
,
Stomach
,
Testis
,
Thyroid
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)
Go to motif analysis