rs259723 chr6:37820444 C>T

Sequence
ctaggagggtatttcctctgactt[C/T]ttcacctcccctcctccccgtcct
ASB in cell types
HUVEC-C (HUVEC, umbilical vein endothelial cells) K562 (myelogenous leukemia) CD14+ monocytes GM12890 (Lymphoblastoid Cell Lines)
ASB for transcription factors
TF65_HUMAN STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TF65_HUMAN 1.16 2.93 0.501.4·10-7 2.06 n/a No Hit
STAT1_HUMAN -4.83 2.55 1.007.5·10-5 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol,  infant head circumference,  mitral annular calcium,  schizophrenia
GTEx eQTL Adipose_Subcutaneous,  Cells_Cultured_fibroblasts,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Heart_Left_Ventricle,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg

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