ADASTRA v5.1.3
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rs260501
chr19:58279441
T
>
G
Sequence
cgagcaggcccatctcctgcgttc[T/G]gctccgccccgccgacacccttgc
ASB in cell types
K562 (myelogenous leukemia)
HEK293 (embryonic kidney)
ASB for transcription factors
NRF1_HUMAN
ENL_HUMAN
REST_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
T
) ASB
-log10 FDR of Alt (
G
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NRF1_HUMAN
1.10
-0.20
2.2·10
-4
1.00
2.19
-1.00
Weak Concordant
ENL_HUMAN
2.17
-0.03
0.03
0.80
2.00
n/a
n/a
REST_HUMAN
2.07
-0.53
0.05
1.00
1.50
-2.44
Concordant
Items per page:
5
1 – 3 of 3
Motif analysis
REST_HUMAN
Concordant
Show reverse complement
Show rev. comp.
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NRF1_HUMAN
Weak Concordant
Genetic associations
GRASP
birth weight
,
hdl cholesterol
GTEx eQTL
Adipose_Subcutaneous
,
Adipose_Visceral_Omentum
,
Adrenal_Gland
,
Artery_Aorta
,
Artery_Coronary
,
Artery_Tibial
,
Brain_Caudate_basal_ganglia
,
Brain_Cerebellar_Hemisphere
,
Brain_Cerebellum
,
Brain_Cortex
,
Brain_Hypothalamus
,
Brain_Nucleus_accumbens_basal_ganglia
,
Brain_Putamen_basal_ganglia
,
Breast_Mammary_Tissue
,
Cells_Cultured_fibroblasts
,
Cells_EBV-transformed_lymphocytes
,
Colon_Sigmoid
,
Colon_Transverse
,
Esophagus_Gastroesophageal_Junction
,
Esophagus_Mucosa
,
Esophagus_Muscularis
,
Heart_Atrial_Appendage
,
Heart_Left_Ventricle
,
Lung
,
Minor_Salivary_Gland
,
Muscle_Skeletal
,
Nerve_Tibial
,
Ovary
,
Pancreas
,
Pituitary
,
Prostate
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Small_Intestine_Terminal_Ileum
,
Spleen
,
Stomach
,
Testis
,
Thyroid
,
Uterus
,
Whole_Blood
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)
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