ADASTRA v5.1.3
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rs260509
chr1:2255546
G
>
A
Sequence
ctgacctcatttcctgtctgtgcc[G/A]ctctgtcctgacctcattttctgt
ASB in cell types
K562 (myelogenous leukemia)
HT1080 (fibrosarcoma)
VCaP (prostate carcinoma)
SK-N-MC (Askin tumor)
ASB for transcription factors
SSRP1_HUMAN
GABPA_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
G
) ASB
-log10 FDR of Alt (
A
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SSRP1_HUMAN
1.39
0.29
7.7·10
-4
0.73
2.00
n/a
n/a
GABPA_HUMAN
1.33
-0.24
4.3·10
-3
1.00
1.42
n/a
No Hit
Items per page:
5
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GRASP
2 hour glucose
,
aortic valve calcium
,
height
,
ldl cholesterol
,
parkinsons disease
,
refractive error
,
total cholesterol
GTEx eQTL
Adipose_Subcutaneous
,
Artery_Tibial
,
Brain_Cerebellum
,
Esophagus_Muscularis
,
Muscle_Skeletal
,
Nerve_Tibial
,
Whole_Blood
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)