rs260509 chr1:2255546 G>A
- Sequence
ctgacctcatttcctgtctgtgcc[G/A]ctctgtcctgacctcattttctgt
- ASB in cell types
- K562 (myelogenous leukemia) HT1080 (fibrosarcoma) VCaP (prostate carcinoma) SK-N-MC (Askin tumor)
- ASB for transcription factors
- SSRP1_HUMAN GABPA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SSRP1_HUMAN | 1.39 | 0.29 | 2.00 | n/a | n/a | |||
| GABPA_HUMAN | 1.33 | -0.24 | 1.42 | n/a | No Hit |
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