rs2608007 chr12:52244156 A>G
- Sequence
agatgagctgtgggtggtgggggg[A/G]tgtgagggtgatttacccacaaat
- ASB in cell types
- CD14+ monocytes PLC/PRF/5 (Hepatocellular carcinoma) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- STAT1_HUMAN TWST1_HUMAN ARNT_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 3.34 | n/a | 2.00 | n/a | No Hit | |||
| TWST1_HUMAN | 2.71 | -2.78 | 1.00 | n/a | No Hit | |||
| ARNT_HUMAN | 2.65 | n/a | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Esophagus_Muscularis, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis