rs263438 chr1:86704810 T>G

Sequence
tccctccacctaccacgtctgccc[T/G]cgccgctctagccctgcgccccag
ASB in cell types
K562 (myelogenous leukemia) HepG2 (hepatoblastoma) 22RV1 (prostate carcinoma) HCASMC (Human coronary artery smooth muscle cells)
ASB for transcription factors
TCF21_HUMAN ANDR_HUMAN KDM1A_HUMAN MNT_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TCF21_HUMAN 1.41 n/a 2.4·10-31.00 2.50 n/a n/a
ANDR_HUMAN 2.47 -0.66 2.5·10-31.00 1.75 n/a No Hit
KDM1A_HUMAN 1.55 -0.15 0.021.00 1.40 n/a n/a
MNT_HUMAN 1.89 -0.01 0.021.00 1.70 n/a n/a
STAT1_HUMAN 1.58 n/a 0.021.00 3.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Artery_Aorta Artery_Tibial Cells_Cultured_fibroblasts Heart_Left_Ventricle Muscle_Skeletal Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg

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