rs2644295 chr7:2820583 A>C

Sequence
taaaaaattgaaaaagaaagtccc[A/C]agcgctgtaaagcacagagcacgg
ASB in cell types
macrophages monocyte-derived macrophages from peripheral blood
ASB for transcription factors
CEBPB_HUMAN SPI1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CEBPB_HUMAN -0.52 2.35 0.956.6·10-4 1.90 n/a No Hit
SPI1_HUMAN 1.48 0.14 6.9·10-41.00 2.06 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP height,  major depressive disorder,  simpson-angus scale
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Putamen_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Thyroid,  Vagina

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