rs2645479 chr17:59843171 A>G
- Sequence
cgtagaatgaagtttcttaaatac[A/G]ctagttaattattgaaacatatgc
- ASB in cell types
- HeLa (cervical adenocarcinoma) HepG2 (hepatoblastoma) K562 (myelogenous leukemia) EA.hy 926 (human umbilical vein endothelial cell line)
- ASB for transcription factors
- PCF11_HUMAN HTF4_HUMAN RFOX2_HUMAN HIF1A_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PCF11_HUMAN | -0.49 | 2.19 | 3.00 | n/a | n/a | |||
| HTF4_HUMAN | 0.83 | 2.71 | 2.10 | n/a | No Hit | |||
| RFOX2_HUMAN | 2.42 | -1.42 | 2.00 | n/a | n/a | |||
| HIF1A_HUMAN | 1.89 | 0.02 | 2.00 | n/a | No Hit | |||
| MAF_HUMAN | 2.88 | -5.39 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood