ADASTRA v5.1.3
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rs266771
chr3:186827549
A
>
G
Sequence
ccgcccggcgaaggacctcgcggg[A/G]cggggacccctagtgcgcctgcgc
ASB in cell types
HepG2 (hepatoblastoma)
SUM159PT (Triple negative breast cancer)
MOLT-4 (Adult T acute lymphoblastic leukemia)
ASB for transcription factors
CTCF_HUMAN
BRD2_HUMAN
GABP1_HUMAN
SPT5H_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
A
) ASB
-log10 FDR of Alt (
G
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN
1.51
0.15
6.8·10
-4
1.00
1.20
n/a
No Hit
BRD2_HUMAN
1.34
-0.29
7.0·10
-3
1.00
1.17
n/a
n/a
GABP1_HUMAN
2.47
-2.17
9.8·10
-3
1.00
1.00
n/a
n/a
SPT5H_HUMAN
1.55
-0.26
0.02
1.00
1.00
n/a
n/a
Items per page:
5
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL
Adipose_Subcutaneous
,
Artery_Tibial
,
Brain_Cerebellum
,
Cells_Cultured_fibroblasts
,
Lung
,
Nerve_Tibial
,
Prostate
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Thyroid
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)