rs266807 chr19:1400680 A>G
- Sequence
ctgggaggggaaggactggtcccc[A/G]gtgggccacacatgggccccccgc
- ASB in cell types
- HEK293 (embryonic kidney) HT1080 (fibrosarcoma)
- ASB for transcription factors
- GLIS1_HUMAN SSRP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GLIS1_HUMAN | n/a | 2.57 | 2.00 | n/a | n/a | |||
| SSRP1_HUMAN | 2.42 | -0.77 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Hippocampus, Brain_Putamen_basal_ganglia, Testis