rs267409 chr5:175460418 T>A
- Sequence
ccttgttccatgatctttcaagtt[T/A]acgtattcatttatccgatgacgt
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) HepG2 (hepatoblastoma) MCF7 TamR (invasive ductal breast carcinoma Tamoxifen resistant) LHSAR (prostate epithelial cells)
- ASB for transcription factors
- ATF2_HUMAN CREB1_HUMAN FOXA1_HUMAN ANDR_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF2_HUMAN | -3.16 | 3.06 | 1.50 | n/a | No Hit | |||
| CREB1_HUMAN | 1.09 | 1.03 | 2.38 | n/a | No Hit | |||
| FOXA1_HUMAN | 1.06 | 0.08 | 2.60 | n/a | No Hit | |||
| ANDR_HUMAN | 2.00 | 0.31 | 1.75 | -4.55 | Concordant |
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Motif analysis
