rs268214 chr2:175168487 C>T
- Sequence
ccaaggagcgttacttctgtaaac[C/T]cggagctgtggaagactgtgattg
- ASB in cell types
- K562 (myelogenous leukemia) breast tumor
- ASB for transcription factors
- ZN316_HUMAN HTF4_HUMAN ESR1_HUMAN SP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN316_HUMAN | -0.75 | 2.41 | 1.00 | n/a | n/a | |||
| HTF4_HUMAN | 0.15 | 2.80 | 1.25 | n/a | No Hit | |||
| ESR1_HUMAN | -0.34 | 3.14 | 1.83 | n/a | No Hit | |||
| SP1_HUMAN | -1.24 | 1.37 | 1.00 | n/a | No Hit | |||
| PKNX1_HUMAN | -0.67 | 0.67 | 1.00 | n/a | No Hit |
Items per page:
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Motif analysis
No data available
Genetic associations
GRASP 2 hour glucose, advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, bipolar disorder, diabetic retinopathy in type 2 diabetes mellitus, hdl cholesterol change with statins, homa-b
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood