rs2686111 chr3:197573383 A>G
- Sequence
tgtgtgacaagtacagtgggggtc[A/G]gcggggggtgggccttgggatgtt
- ASB in cell types
- HepG2 (hepatoblastoma) liver
- ASB for transcription factors
- SP1_HUMAN RXRB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SP1_HUMAN | 2.39 | -2.06 | 1.00 | 4.98 | Discordant | |||
| RXRB_HUMAN | 2.54 | -2.26 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood