rs270164 chr5:140157447 G>T
- Sequence
ttcctgacagggggcggggggtgg[G/T]ggtgggagaaagagtgaagggtgg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) neural cell adrenal gland pancreas
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN RAD21_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.09 | 1.93 | 1.30 | 0.89 | Weak Concordant | |||
| SMC3_HUMAN | -2.93 | 3.24 | 1.00 | n/a | n/a | |||
| RAD21_HUMAN | -1.24 | 2.45 | 1.00 | n/a | n/a | |||
| STAG1_HUMAN | 0.05 | 0.63 | 1.08 | n/a | n/a | |||
| IKZF2_HUMAN | n/a | 2.59 | 1.00 | n/a | n/a |
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Motif analysis
