rs2703580 chr15:57060836 C>T
- Sequence
ctttttctgcttaccttggtctta[C/T]ggctgaagctttggaaagtttatt
- ASB in cell types
- CFPAC-1(pancreatic ductal adenocarcinoma)
- ASB for transcription factors
- FOXA2_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA2_HUMAN | -0.10 | 1.49 | 1.04 | n/a | No Hit | |||
| FOXA1_HUMAN | -0.71 | 1.37 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP bipolar disorder, chronic kidney disease, hdl cholesterol, lp-pla2 mass, major depressive disorder, parkinsons disease
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid