rs2708489 chr12:40168640 A>G
- Sequence
agggagaatcacttcaacccaggg[A/G]gcagagcttgcagtgagctgagat
- ASB in cell types
- MS-1 (Small cell lung carcinoma)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.06 | 1.62 | 1.20 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP 2 hour glucose, body mass index (bmi), college completion, hdl cholesterol change with statins, microalbuminuria, triglycerides change with statins, urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Subcutaneous, Brain_Nucleus_accumbens_basal_ganglia, Esophagus_Mucosa, Lung, Thyroid, Whole_Blood