rs271392 chr1:29689521 G>T
- Sequence
ggggcctcccctcccccctccggc[G/T]ttacagctcccacgacaccaggtg
- ASB in cell types
- MS-1 (Small cell lung carcinoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.11 | 0.60 | 1.36 | -0.09 | Weak Concordant | |||
| STAG1_HUMAN | 1.37 | 0.01 | 1.00 | n/a | n/a |
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Motif analysis
