rs2716138 chr1:59005618 A>G

Sequence
atgtcctaaggatgattttgcctg[A/G]acaggggaacatgtgtgtcttccc
ASB in cell types
CD14+ monocytes
ASB for transcription factors
STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN 2.43 0.06 0.011.00 2.00 3.93 Discordant
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Motif analysis

STAT1_HUMAN Discordant
STAT1_HUMAN pic

Genetic associations

GRASP hdl cholesterol,  serum creatinine
GTEx eQTL Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Small_Intestine_Terminal_Ileum

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