rs271739 chr1:234528201 G>A

Sequence
tctcccagcctggactggagctgc[G/A]tggctgccttccttctgtgcggct
ASB in cell types
HEK293 (embryonic kidney)
ASB for transcription factors
ZIC2_HUMAN ZN189_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZIC2_HUMAN 3.00 n/a 4.7·10-41.00 3.00 n/a n/a
ZN189_HUMAN 2.84 n/a 9.3·10-31.00 4.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Breast_Mammary_Tissue,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Ovary,  Pituitary,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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