rs271762 chr1:234534101 T>C

Sequence
tgcgtggcagcagttcttagccaa[T/C]tcacattttttagcagttctggcc
ASB in cell types
SK-N-SH (neuroblastoma) BEAS-2B (bronchial epithelium)
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
SK-N-SH (neuroblastoma) 0.32 1.36 1.003.3·10-3 1.03
BEAS-2B (bronchial epithelium) 0.15 1.01 0.980.05 1.00
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Motif analysis

No data available

Genetic associations

GRASP fasting blood glucose,  homa-b,  ldl cholesterol,  total cholesterol change with statins
GTEx eQTL Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Breast_Mammary_Tissue,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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