rs272456 chr5:6483899 C>T
- Sequence
ctggtgggatgttctagtcatcta[C/T]tttgtgaagccacttctctggtcg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 2.67 | -4.89 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP asthma, comorbid depressive syndrome and alcohol dependence, hypertension (early onset hypertension), parkinsons disease, prop taste detection threshold, simpson-angus scale