rs273159 chr7:41478478 C>T
- Sequence
tttctgaaatcaaagcaaatgctt[C/T]gggataaactgcccatttcaagaa
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- IKZF1_HUMAN IKZF2_HUMAN MEF2B_HUMAN MTA2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | -0.44 | 3.09 | 1.00 | 2.37 | Concordant | |||
| IKZF2_HUMAN | -2.37 | 2.77 | 1.00 | n/a | n/a | |||
| MEF2B_HUMAN | -3.08 | 2.96 | 1.00 | n/a | No Hit | |||
| MTA2_HUMAN | -2.41 | 2.65 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP eye color, irritible bowel syndrome, sporadic creutzfeldt-jakob disease, transmission distortion