rs274852 chr2:145186440 C>T
- Sequence
cactttggctgttccctcgcagcc[C/T]gtttcattttataaagcctggtcc
- ASB in cell types
- GM12892 (female B-cells lymphoblastoid cell line) GM02630 (Fanconi anemi)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.58 | 1.15 | 1.15 | n/a | No Hit | |||
| STAG1_HUMAN | 0.28 | 1.44 | 1.05 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP late onset alzheimers disease, ldl cholesterol change with statins, total cholesterol change with statins