rs275469 chr5:6837760 A>G
- Sequence
gggtgaaggaggaacgtttgcagg[A/G]cccagagccaggatcacaaacagg
- ASB in cell types
- foreskin keratinocyte LNCaP (prostate carcinoma) GM18505 (female B-cells Lymphoblastoid Cell Lines) T47D (invasive ductal carcinoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.99 | 0.31 | 1.57 | n/a | No Hit | |||
| STAG1_HUMAN | 2.27 | -1.46 | 1.25 | n/a | n/a |
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