rs276318 chr2:113997300 C>T

Sequence
tgtttgtggtagttgttaaatcat[C/T]cattgcatttgtggtgggatgtgg
ASB in cell types
GM12891 (male B- cells lymphoblastoid cell line)
ASB for transcription factors
STAG1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAG1_HUMAN -0.08 1.74 1.008.9·10-4 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP aortic valve calcium,  cystatin c in serum,  hdl cholesterol,  mitral annular calcium
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Brain_Amygdala,  Brain_Cortex,  Brain_Hippocampus,  Brain_Nucleus_accumbens_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis,  Whole_Blood

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