rs2790052 chr1:165769226 G>C

Sequence
agtaagaagactgacttccgcaaa[G/C]gtactgaacgactgggtgtaggtg
ASB in cell types
primary B-CLL cells MDM(monocyte derived macrophages)
ASB for transcription factors
BRD4_HUMAN SPI1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
BRD4_HUMAN 0.38 2.25 0.931.4·10-3 1.93 n/a n/a
SPI1_HUMAN 0.28 1.61 0.970.02 2.00 0.92 Weak Concordant
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Motif analysis

SPI1_HUMAN Weak Concordant
SPI1_HUMAN pic

Genetic associations

GRASP intraocular pressure,  refractive error,  systolic blood pressure (sbp)
GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Liver,  Lung,  Minor_Salivary_Gland,  Muscle_Skeletal,  Nerve_Tibial,  Ovary,  Pancreas,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Stomach,  Testis,  Thyroid,  Uterus,  Vagina

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