rs27990 chr5:66864661 A>G
- Sequence
aattatgtccccccccgaaaatac[A/G]tggaagtcctaacccccaatactg
- ASB in cell types
- LNCaP (prostate carcinoma) pancreas adrenal gland GM18486 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN STAG2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.16 | 2.10 | 1.69 | n/a | No Hit | |||
| STAG1_HUMAN | 0.10 | 1.49 | 2.40 | n/a | n/a | |||
| STAG2_HUMAN | -0.48 | 2.71 | 1.50 | n/a | n/a |
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