rs2803547 chr10:86649229 T>C

Sequence
ctaagacatttaatattcccctgg[T/C]aacagctcctgggcgtttcctagg
ASB in cell types
MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
RFX1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RFX1_HUMAN -1.98 1.71 1.001.5·10-4 1.33 4.18 Concordant
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Motif analysis

RFX1_HUMAN Concordant
RFX1_HUMAN pic

Genetic associations

GRASP fasting blood glucose,  height,  obesity with early age of onset (age >2),  waist hip ratio
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Breast_Mammary_Tissue,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Minor_Salivary_Gland,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis,  Thyroid

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