rs280501 chr19:10380646 C>T
- Sequence
ccattggcagctgctctgttctcc[C/T]tgctcgtcaccattggattttttt
- ASB in cell types
- HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma) WA01 (H1, human embryonic stem cells) HCT-116 (colon carcinoma)
- ASB for transcription factors
- CREB1_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | 1.30 | 0.29 | 1.56 | n/a | No Hit | |||
| ANDR_HUMAN | 2.55 | -0.09 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adrenal_Gland, Artery_Aorta, Artery_Coronary, Brain_Cerebellar_Hemisphere, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Skin_Sun_Exposed_Lower_leg