rs280502 chr19:10380799 G>T
- Sequence
gctggcactcggtggacggagacg[G/T]gggaggggcttgcgagaggcggga
- ASB in cell types
- HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma) HepG2 (hepatoblastoma)
- ASB for transcription factors
- RBM25_HUMAN SP2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBM25_HUMAN | n/a | 0.69 | 6.00 | n/a | n/a | |||
| SP2_HUMAN | -1.62 | 1.85 | 1.67 | -3.27 | Discordant |
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Motif analysis
